STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1985PFAM: protein of unknown function DUF939; KEGG: dma:DMR_35100 hypothetical membrane protein. (347 aa)    
Predicted Functional Partners:
Bsel_2724
PFAM: protein of unknown function DUF939; KEGG: dma:DMR_35100 hypothetical membrane protein.
  
     0.634
Bsel_0629
Hypothetical protein.
  
     0.603
Bsel_0169
Transcriptional regulator protein-like protein; KEGG: rpf:Rpic12D_4272 hypothetical protein; Belongs to the GbsR family.
  
     0.560
Bsel_1600
PFAM: Cell-wall binding lipoprotein YkyA, putative; KEGG: viral A-type inclusion protein.
 
     0.508
Bsel_0848
KEGG: abu:Abu_2143 hypothetical protein.
  
     0.504
Bsel_3049
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: tbd:Tbd_1180 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein.
  
     0.503
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.501
Bsel_1981
PFAM: SMC domain protein; KEGG: dps:DP0526 ATP-dependent dsDNA exonuclease (SBCC).
       0.497
addA
Recombination helicase AddA; ATP-dependent DNA helicase.
       0.496
Bsel_1984
ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.
       0.496
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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