STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2006PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cja:CJA_0838 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Bsel_0517
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: hypothetical protein.
 
 
 0.932
xylA
TIGRFAM: xylose isomerase; KEGG: Os07g0669100; hypothetical protein; K01805 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.925
Bsel_0458
PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB.
 
  
 0.631
Bsel_2934
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: ara:Arad_0117 hypothetical protein.
 
  
 0.623
Bsel_0982
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rlg:Rleg_5712 xylose isomerase domain protein TIM barrel.
 
  
 0.611
Bsel_3240
PFAM: PfkB domain protein; KEGG: hypothetical protein LOC100242115; K00847 fructokinase.
 
  
 0.595
Bsel_2936
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: amc:MADE_00428 twin-arginine translocation pathway signal.
 
  
 0.591
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: gsu:GSU2271 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.536
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.493
Bsel_2398
CBS domain containing protein; KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; Polynucleotide adenylyltransferase region; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.437
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.