STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2161Hypothetical protein; KEGG: dal:Dalk_2229 putative ATP/GTP-binding protein. (200 aa)    
Predicted Functional Partners:
Bsel_2160
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit.
 
     0.896
Bsel_2157
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit.
 
     0.872
Bsel_2158
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dal:Dalk_2232 thiamine pyrophosphate protein domain protein TPP-binding.
 
     0.864
Bsel_2159
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dal:Dalk_2231 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
 
   
 0.861
Bsel_3055
PFAM: lipopolysaccharide biosynthesis protein; KEGG: dps:DPPB85 related to exopolysaccharide biosynthesis protein (GumC protein).
  
 
 0.587
Bsel_2163
PFAM: Abortive infection protein; KEGG: vha:VIBHAR_06754 hypothetical protein.
       0.529
Bsel_2164
TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; KEGG: nmu:Nmul_A2304 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein.
       0.516
Bsel_2162
Hypothetical protein.
       0.513
Bsel_2165
KEGG: hypothetical protein.
       0.513
Bsel_3047
PFAM: sugar transferase; KEGG: fph:Fphi_1244 galactosyl transferase.
  
  
 0.466
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.