STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2181PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: wsu:WS0578 iron-sulfur protein precursor. (337 aa)    
Predicted Functional Partners:
Bsel_1220
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bxe:Bxe_B2551 formate dehydrogenase gamma subunit.
 
 0.983
Bsel_2180
KEGG: hhe:HH1479 hypothetical protein.
 
 
 0.976
Bsel_1219
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bav:BAV3144 nformate dehydrogenase, iron-sulfur subunit.
  
  
 
0.926
Bsel_0709
PFAM: N-formylglutamate amidohydrolase; KEGG: sml:Smlt3109 hypothetical protein.
    
  0.900
Bsel_1905
PFAM: Acetamidase/Formamidase; KEGG: dvm:DvMF_1872 acetamidase/formamidase.
     
  0.900
Bsel_0562
PFAM: Polysulphide reductase NrfD; KEGG: afw:Anae109_3085 polysulphide reductase NrfD.
 
 
 0.817
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.808
Bsel_1991
TIGRFAM: formate acetyltransferase; KEGG: dar:Daro_2096 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical.
    
 0.808
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.802
Bsel_1345
KEGG: dds:Ddes_1534 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein.
     
 0.801
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.