STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2201Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: pca:Pcar_1952 negative regulator of ferric uptake; Belongs to the Fur family. (144 aa)    
Predicted Functional Partners:
Bsel_1620
PFAM: protein of unknown function DUF1507; Belongs to the UPF0358 family.
  
     0.569
Bsel_2202
PFAM: NUDIX hydrolase; KEGG: tbd:Tbd_0232 hypothetical protein.
       0.565
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.554
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.547
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
     
 0.539
Bsel_0412
PFAM: ROK family protein; KEGG: vha:VIBHAR_02870 hypothetical protein.
  
  
 0.529
Bsel_1920
PFAM: CoA-binding domain protein; KEGG: tbd:Tbd_2525 hypothetical protein.
  
    0.512
Bsel_2723
KEGG: gme:Gmet_0147 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II.
     
 0.499
Bsel_1170
Putative transcriptional regulator; PFAM: regulatory protein ArsR; KEGG: aha:AHA_3605 hypothetical protein.
  
    0.498
Bsel_2296
KEGG: nmu:Nmul_A1629 putative transcriptional regulator.
  
    0.498
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.