STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2247PFAM: protein of unknown function DUF939; KEGG: vfm:VFMJ11_1016 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Bsel_1553
PFAM: adenylate cyclase.
  
     0.598
Bsel_1745
TIGRFAM: flagellar export protein FliJ; KEGG: bba:Bd3400 flagellar basal body formation protein FliJ.
  
     0.472
Bsel_0304
PFAM: flavodoxin/nitric oxide synthase; KEGG: dma:DMR_03500 putative flavodoxin.
  
     0.462
Bsel_2246
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: gme:Gmet_3251 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase.
       0.440
Bsel_2248
Hypothetical protein.
       0.436
Bsel_2740
PFAM: Protein of unknown function DUF1811.
  
     0.434
Bsel_1714
PFAM: protein of unknown function DUF1128; Belongs to the UPF0435 family.
  
     0.424
Bsel_2242
KEGG: rlt:Rleg2_4899 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
 
     0.410
Bsel_0428
KEGG: gem:GM21_3065 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.405
Bsel_1756
PFAM: flagellar biosynthesis protein FliO; KEGG: sat:SYN_03207 flagellar biosynthetic protein.
  
     0.404
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.