STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2483PFAM: ABC transporter EcsB; KEGG: similar to AGAP012156-PA. (410 aa)    
Predicted Functional Partners:
Bsel_2484
KEGG: mxa:MXAN_4750 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.938
Bsel_3300
PFAM: YycH family protein.
  
     0.721
Bsel_3299
PFAM: Protein of unknown function YycH.
  
     0.704
Bsel_1454
TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD.
  
     0.703
Bsel_1333
PFAM: N-6 DNA methylase; KEGG: bpt:Bpet3991 type I restriction modification enzyme M subunit.
 
     0.688
Bsel_1746
KEGG: hypothetical protein LOC100150943.
  
     0.682
Bsel_1269
PFAM: protein of unknown function DUF948; KEGG: gme:Gmet_2781 hypothetical protein.
  
     0.659
Bsel_1365
PFAM: replication initiation and membrane attachment family protein.
 
    0.654
Bsel_1270
KEGG: hypothetical protein.
 
     0.635
Bsel_0542
KEGG: SPRT-like metalloprotease; PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; Belongs to the SprT family.
  
     0.633
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.