STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylATIGRFAM: xylose isomerase; KEGG: Os07g0669100; hypothetical protein; K01805 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (437 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; KEGG: scl:sce9296 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.
 
 
 0.992
Bsel_0931
KEGG: vpa:VPA1424 PTS system, fructose-specific IIABC component; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
     
 0.936
Bsel_2006
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cja:CJA_0838 hypothetical protein.
 
  
 0.925
Bsel_3240
PFAM: PfkB domain protein; KEGG: hypothetical protein LOC100242115; K00847 fructokinase.
    
 0.909
Bsel_2835
Xylan 1,4-beta-xylosidase; KEGG: csa:Csal_1143 alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.845
Bsel_2307
Glucokinase, ROK family; KEGG: ara:Arad_9637 transcriptional regulator protein; TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein.
    
 0.843
Bsel_0416
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: avi:Avi_5411 beta-galactosidase.
    
 0.820
Bsel_2824
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.791
Bsel_2827
PFAM: ROK family protein; KEGG: scl:sce7667 ROK family transcriptional regulator.
 
   
 0.680
Bsel_2823
PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_3628 hypothetical protein.
       0.445
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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