STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2835Xylan 1,4-beta-xylosidase; KEGG: csa:Csal_1143 alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family. (526 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.880
xylA
TIGRFAM: xylose isomerase; KEGG: Os07g0669100; hypothetical protein; K01805 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.845
Bsel_2836
PFAM: protein of unknown function DUF624; KEGG: hypothetical protein.
 
     0.772
Bsel_2834
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_4515 binding-protein-dependent transport systems inner membrane component.
  
    0.692
Bsel_0339
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: rlt:Rleg2_5890 alpha-N-arabinofuranosidase.
 
  
 0.669
Bsel_2832
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
 
  
 0.661
Bsel_2833
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0945 binding-protein-dependent transport systems inner membrane component.
  
    0.636
Bsel_0340
Alpha-N-arabinofuranosidase; KEGG: eca:ECA3793 putatuve glycosysl hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.632
xylB
Xylulokinase; KEGG: scl:sce9296 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.
 
  
 0.550
Bsel_0334
Arabinan endo-1,5-alpha-L-arabinosidase; KEGG: scl:sce1485 putative Beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.496
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.