STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_2889PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dds:Ddes_1618 CMP/dCMP deaminase zinc-binding. (175 aa)    
Predicted Functional Partners:
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
  
 
 0.939
tdk
KEGG: mxa:MXAN_5072 thymidine kinase; PFAM: thymidine kinase.
  
 
 0.932
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
    
 0.929
Bsel_2067
PFAM: deoxynucleoside kinase; KEGG: hypothetical protein.
   
 0.919
Bsel_0991
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; S-layer domain protein; nucleic acid binding OB-fold tRNA/helicase-type; Endonuclease/exonuclease/phosphatase; KEGG: scl:sce0688 endonuclease/exonuclease/phosphatase family protein.
  
 
  0.904
Bsel_0813
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; S-layer domain protein; KEGG: mmw:Mmwyl1_4082 5'-nucleotidase domain-containing protein.
  
 
  0.903
Bsel_1067
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; S-layer domain protein; KEGG: sfu:Sfum_0741 5'-nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family.
  
 
  0.903
Bsel_1160
PFAM: metallophosphoesterase; KEGG: seh:SeHA_C4439 5'-nucleotidase domain protein; Belongs to the 5'-nucleotidase family.
  
 
  0.903
cmk
KEGG: pmu:PM0802 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
    
  0.903
Bsel_2278
PFAM: peptidase M24; creatinase; KEGG: gur:Gura_1824 peptidase M24.
  
    0.580
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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