STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3012Hypothetical protein. (251 aa)    
Predicted Functional Partners:
Bsel_3009
PFAM: Terminase; KEGG: bcm:Bcenmc03_1289 terminase.
 
   
 0.904
Bsel_3014
DNA methylase N-4/N-6 domain protein; KEGG: mca:MCA2655 prophage LambdaMc01, DNA methyltransferase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.869
Bsel_3010
KEGG: bph:Bphy_7138 P27 family phage terminase small subunit; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27.
 
     0.849
Bsel_0781
DNA methylase N-4/N-6 domain protein; KEGG: mms:mma_2757 DNA modification methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.816
Bsel_3019
Hypothetical protein.
 
    0.804
Bsel_3017
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; PFAM: Sigma-70 region 4 type 2.
 
    0.802
Bsel_3015
KEGG: ZNF236; zinc finger protein 236.
 
     0.780
Bsel_1422
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
  
 0.776
Bsel_0788
PFAM: Terminase; KEGG: bcm:Bcenmc03_1289 terminase.
 
   
 0.775
Bsel_0776
Hypothetical protein.
 
    0.774
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.