STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3052PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD. (606 aa)    
Predicted Functional Partners:
Bsel_3047
PFAM: sugar transferase; KEGG: fph:Fphi_1244 galactosyl transferase.
 
  
 0.872
Bsel_3055
PFAM: lipopolysaccharide biosynthesis protein; KEGG: dps:DPPB85 related to exopolysaccharide biosynthesis protein (GumC protein).
 
  
 0.755
Bsel_3051
KEGG: dat:HRM2_42540 GtaB; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase.
  
  
 0.737
Bsel_3054
TIGRFAM: capsular exopolysaccharide family; KEGG: mxa:MXAN_1025 capsular exopolysaccharide family protein; PFAM: ATPase-like, ParA/MinD.
 
  
 0.734
Bsel_3039
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: spl:Spea_1408 polysaccharide biosynthesis protein.
 
  
 0.720
Bsel_1014
PFAM: O-antigen polymerase; KEGG: sde:Sde_0152 hypothetical protein.
  
  
 0.670
Bsel_1748
PFAM: flagellar hook capping protein; KEGG: lip:LI0567 flagellar hook capping protein.
  
  
 0.624
Bsel_3045
PFAM: glycosyl transferase group 1; KEGG: ftn:FTN_1427 glycosyl transferase, group 1.
 
  
 0.587
Bsel_3046
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: fph:Fphi_1245 UDP-glucose 4-epimerase.
 
  
 0.581
Bsel_3053
Protein-tyrosine-phosphatase; KEGG: eba:ebA6802 capsular polysaccharide biosynthesis protein; PFAM: PHP domain protein.
 
  
 0.553
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.