STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3079KEGG: fph:Fphi_1487 capsule biosynthesis protein CapC. (150 aa)    
Predicted Functional Partners:
Bsel_3080
PFAM: Mur ligase middle domain protein; KEGG: fph:Fphi_1486 putative capsule biosynthesis protein.
 
  
 0.937
Bsel_3078
PFAM: Capsule synthesis protein, CapA; KEGG: gsu:GSU0036 capsule biosynthesis protein, putative.
 
  
 0.914
Bsel_3077
PFAM: gamma-glutamyltranspeptidase; KEGG: vsp:VS_3081 gamma-glutamyltranspeptidase.
 
   
 0.896
Bsel_0860
KEGG: ilo:IL2400 NAD-dependent epimerase/dehydratase.
 
  
 0.810
Bsel_0858
PFAM: Capsule synthesis protein, CapA; KEGG: cja:CJA_1179 putative capsule biosynthesis protein CapA.
 
  
 0.708
Bsel_3076
Hypothetical protein.
       0.603
Bsel_0857
Gamma-glutamyltransferase; KEGG: bja:blr0583 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase.
 
   
 0.601
Bsel_0513
PFAM: Lipoprotein LpqB, GerMN domain; KEGG: hypothetical protein.
  
     0.473
Bsel_3081
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gbm:Gbem_3368 NLP/P60 protein.
 
   
 0.450
Bsel_1520
PFAM: GCN5-related N-acetyltransferase; KEGG: similar to N-acetyltransferase 8B.
  
     0.441
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.