STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3097PFAM: Auxin Efflux Carrier; KEGG: gem:GM21_2895 auxin efflux carrier. (315 aa)    
Predicted Functional Partners:
Bsel_1345
KEGG: dds:Ddes_1534 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein.
  
  
 0.718
Bsel_2426
Contains selenocysteine; PFAM: HesB/YadR/YfhF-family protein; KEGG: gsu:GSU1207 HesB/YadR/YfhF family protein, selenocysteine-containing; Belongs to the HesB/IscA family.
  
     0.552
Bsel_2782
KEGG: tgr:Tgr7_3078 hypothetical protein.
 
     0.520
Bsel_1502
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: rso:RSc1377 hypothetical protein.
  
     0.471
Bsel_3096
PFAM: GCN5-related N-acetyltransferase; KEGG: cja:CJA_2969 acetyltransferase, GNAT family.
       0.467
Bsel_0216
Hypothetical protein; KEGG: sfr:Sfri_1781 UspA domain-containing protein.
  
     0.423
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.