STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3103KEGG: shl:Shal_2789 transcriptional regulator, CdaR. (532 aa)    
Predicted Functional Partners:
Bsel_3104
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pmr:PMI0169 anaerobic dimethyl sulfoxide reductase chain b (dmso reductase iron-sulfur subunit).
       0.773
Bsel_0162
PFAM: protein of unknown function DUF1116; KEGG: lhk:LHK_01303 DUF1116 domain containing protein.
 
     0.666
Bsel_0161
PFAM: FdrA family protein; KEGG: ecd:ECDH10B_0307 acyl-CoA synthetase.
 
     0.611
Bsel_3105
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: stm:STM0611 putative oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.587
Bsel_0160
Hypothetical protein; KEGG: lhk:LHK_00981 YlbF.
 
     0.581
Bsel_3102
PFAM: cytoplasmic chaperone TorD family protein; KEGG: ccv:CCV52592_2104 cytoplasmic chaperone.
 
     0.524
Bsel_3101
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ccv:CCV52592_2107 anaerobic dimethyl sulfoxide reductase subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.492
Bsel_3099
KEGG: esa:ESA_01917 hypothetical protein.
 
     0.484
Bsel_3098
PFAM: Radical SAM domain protein; KEGG: ccv:CCV52592_2101 radical SAM family protein.
 
     0.420
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.