STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3214PFAM: Protein of unknown function YwhD. (185 aa)    
Predicted Functional Partners:
Bsel_1821
PFAM: protein of unknown function DUF1333; Belongs to the UPF0342 family.
  
    0.765
Bsel_1169
PFAM: protein of unknown function DUF86.
  
     0.742
Bsel_1714
PFAM: protein of unknown function DUF1128; Belongs to the UPF0435 family.
  
     0.738
Bsel_2083
KEGG: dma:DMR_33470 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein.
  
     0.682
Bsel_1756
PFAM: flagellar biosynthesis protein FliO; KEGG: sat:SYN_03207 flagellar biosynthetic protein.
  
     0.677
Bsel_1845
Hypothetical protein.
  
     0.675
Bsel_1269
PFAM: protein of unknown function DUF948; KEGG: gme:Gmet_2781 hypothetical protein.
  
     0.648
Bsel_1844
PFAM: protein of unknown function DUF1453.
  
     0.647
Bsel_1806
Hypothetical protein.
  
     0.644
Bsel_2740
PFAM: Protein of unknown function DUF1811.
  
     0.642
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.