STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3245PFAM: sulfatase; KEGG: afw:Anae109_1028 sulfatase; Belongs to the LTA synthase family. (641 aa)    
Predicted Functional Partners:
Bsel_1333
PFAM: N-6 DNA methylase; KEGG: bpt:Bpet3991 type I restriction modification enzyme M subunit.
  
     0.623
Bsel_2714
Hypothetical protein.
  
     0.588
Bsel_1910
PFAM: protein of unknown function DUF1273; Belongs to the UPF0398 family.
  
     0.524
Bsel_3244
Hypothetical protein.
       0.503
Bsel_1400
PFAM: Protein of unknown function DUF2507.
  
     0.496
Bsel_3246
PFAM: peptidase M29 aminopeptidase II; KEGG: smd:Smed_3504 peptidase M29 aminopeptidase II.
       0.486
Bsel_1247
Hypothetical protein.
  
     0.484
Bsel_1258
Small secreted protein-like protein.
  
     0.475
Bsel_2316
Hypothetical protein.
  
     0.456
Bsel_1617
PFAM: Protein of unknown function DUF2197.
  
     0.450
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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