STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3252PFAM: type IV pilus assembly PilZ. (137 aa)    
Predicted Functional Partners:
Bsel_3253
Aspartate racemase; KEGG: dat:HRM2_07710 RacD2; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; Belongs to the aspartate/glutamate racemases family.
       0.697
Bsel_1998
Hypothetical protein.
  
     0.606
Bsel_1617
PFAM: Protein of unknown function DUF2197.
  
     0.579
Bsel_3134
KEGG: hypothetical protein LOC691864.
  
     0.560
Bsel_1376
PFAM: dUTPase; KEGG: cco:CCC13826_2153 dUTPase.
  
     0.522
Bsel_1745
TIGRFAM: flagellar export protein FliJ; KEGG: bba:Bd3400 flagellar basal body formation protein FliJ.
  
     0.515
Bsel_3251
Amidohydrolase; KEGG: eca:ECA2964 putative peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; peptidase M20; Belongs to the peptidase M20A family.
       0.509
Bsel_1247
Hypothetical protein.
  
     0.507
Bsel_2019
PFAM: YolD-like protein.
  
     0.498
Bsel_2952
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: Transposase family protein.
  
     0.468
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.