STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3258KEGG: gsu:GSU1456 hypothetical protein. (1018 aa)    
Predicted Functional Partners:
Bsel_3260
KEGG: mlo:mlr6693 hypothetical protein.
 
     0.786
Bsel_2731
PFAM: HEAT domain containing protein; KEGG: mlo:mlr6693 hypothetical protein.
 
     0.781
Bsel_3259
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: sat:SYN_00856 glycosyltransferase.
 
     0.781
Bsel_2730
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: mlo:mlr6694 hypothetical protein.
 
     0.780
Bsel_2732
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pmy:Pmen_0723 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver.
 
  
 0.754
Bsel_0618
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pmy:Pmen_0723 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver.
 
  
 0.697
Bsel_2118
SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein.
  
 
 0.607
Bsel_2219
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sfu:Sfum_0517 methyltransferase type 12.
 
   
 0.599
Bsel_0620
KEGG: gur:Gura_1221 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
  
 0.508
Bsel_2027
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; KEGG: gme:Gmet_0987 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
  
 0.485
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.