STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_3300PFAM: YycH family protein. (453 aa)    
Predicted Functional Partners:
Bsel_3299
PFAM: Protein of unknown function YycH.
 
  
 0.981
Bsel_3301
Multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; TIGRFAM: PAS sensor protein; KEGG: pca:Pcar_0654 two-component sensor histidine kinase PhoR; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.
 
  
 0.938
Bsel_3298
PFAM: beta-lactamase domain protein; KEGG: dps:DP2606 hypothetical protein.
  
  
 0.889
Bsel_3302
Two component transcriptional regulator, winged helix family; KEGG: sat:SYN_00981 response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
  
  
 0.821
Bsel_3139
TIGRFAM: conserved hypothetical protein; PFAM: conserved hypothetical protein.
  
     0.740
Bsel_1454
TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD.
  
     0.738
Bsel_2239
KEGG: hypothetical protein.
  
     0.737
Bsel_1025
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: gur:Gura_3121 hypothetical protein.
  
     0.732
Bsel_1747
PFAM: flagellar hook-length control protein; KEGG: dvu:DVU1445 flagellar hook-length control domain-containing protein.
  
     0.731
Bsel_1728
Hypothetical protein; KEGG: GK17402 gene product from transcript GK17402-RA.
  
     0.721
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.