STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0133Porin; PFAM: porin; KEGG: bmb:BruAb1_0116 outer membrane protein, hypothetical. (229 aa)    
Predicted Functional Partners:
Oant_0173
PFAM: protein of unknown function DUF1150; KEGG: bmb:BruAb1_0158 hypothetical protein.
  
     0.739
Oant_2534
KEGG: bmb:BruAb1_0776 hypothetical protein.
  
     0.719
Oant_2153
KEGG: bmb:BruAb1_1075 hypothetical protein.
  
     0.688
Oant_2221
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.674
Oant_3597
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.673
Oant_2645
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.653
Oant_2646
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.651
Oant_0447
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.639
Oant_2545
KEGG: bmb:BruAb1_0764 hypothetical protein.
  
     0.629
Oant_0580
PFAM: Invasion associated locus B family protein; KEGG: bmb:BruAb1_0488 hypothetical protein.
  
     0.615
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.