STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0140PFAM: cytochrome P450; KEGG: mlo:mlr5192 similar to cytochrome P450. (464 aa)    
Predicted Functional Partners:
Oant_2870
KEGG: bme:BMEII0989 hypothetical protein.
  
 
 0.936
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.917
Oant_3238
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: atc:AGR_C_2205 hypothetical protein.
  
 0.886
Oant_4051
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: atc:AGR_C_2205 hypothetical protein.
  
 0.886
Oant_1711
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bme:BMEI0548 flavohemoprotein.
  
 0.883
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.874
Oant_0373
PFAM: AMP-dependent synthetase and ligase; KEGG: bme:BMEI1632 acyl-CoA synthase.
  
 0.851
Oant_2693
PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo3066 long-chain fatty-acid-CoA ligase.
  
 0.851
Oant_2112
PFAM: ferredoxin; KEGG: bms:BR1026 ferredoxin, 2Fe-2S.
  
 0.792
Oant_2371
PFAM: phosphopantetheine-binding; KEGG: bmb:BruAb1_0867 acyl carrier protein.
 
 0.784
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.