STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (197 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: bmb:BruAb2_0267 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 
 0.952
rpmC
PFAM: ribosomal protein L29; KEGG: bmb:BruAb1_1230 RpmC, ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.945
rpmA
PFAM: ribosomal protein L27; KEGG: bmb:BruAb1_1828 RpmA, ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.934
rpsI
PFAM: ribosomal protein S9; KEGG: bms:BR0790 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.934
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: bmb:BruAb1_1758 RpmF, ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 
 0.933
rpmH
PFAM: ribosomal protein L34; KEGG: bmb:BruAb2_0961 RpmH, ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.933
rpsP
PFAM: ribosomal protein S16; KEGG: bms:BR1824 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.930
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
   0.929
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.929
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.929
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.