STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0175KEGG: bms:BR0165 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Oant_0587
PFAM: protein of unknown function DUF983; KEGG: bms:BR0473 hypothetical protein.
  
     0.739
Oant_2406
PFAM: protein of unknown function DUF1467; KEGG: bms:BR0819 hypothetical protein.
  
     0.707
Oant_3673
PFAM: protein of unknown function DUF983; KEGG: bms:BRA0606 hypothetical protein.
  
     0.696
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.600
Oant_0148
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bmb:BruAb1_0130 sensor histidine kinase.
  
     0.595
Oant_0919
KEGG: bms:BR2016 hypothetical protein.
  
     0.561
Oant_0327
KEGG: bmb:BruAb1_0281 hypothetical protein.
  
     0.468
Oant_0588
PFAM: Surfeit locus 1 family protein; KEGG: bms:BR0474 SurF1 family protein.
 
     0.420
Oant_0996
KEGG: bmb:BruAb1_1960 hypothetical protein.
  
     0.420
Oant_4030
Putative phage repressor; PFAM: peptidase S24 S26A and S26B; KEGG: bmb:BruAb2_0440 peptidase, S24 family; Belongs to the peptidase S24 family.
  
     0.408
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.