STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0356PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PE00243 probable transcriptional regulator protein, GntR family. (238 aa)    
Predicted Functional Partners:
Oant_0354
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01977 putative sugar-binding periplasmic ABC transporter protein.
 
    0.874
Oant_0355
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:pRL110363 putative methionine lyase.
 
     0.827
Oant_1414
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bmb:BruAb2_0289 transcriptional regulator, GntR family.
  
     0.758
Oant_0353
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL110365 putative permease component of ABC transporter.
 
     0.683
Oant_3335
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: oih:OB2847 transcriptional regulator.
  
    0.674
Oant_2937
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr7971 transcriptional regulatory protein.
  
    0.658
Oant_1285
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bme:BMEII0281 transcriptional regulator, GntR family.
  
    0.651
Oant_0352
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01979 putative sugar transport system permease ABC transporter protein.
 
    0.649
Oant_3096
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sme:SMb20773 putative transcriptional regulator, GntR family protein.
  
    0.551
Oant_2897
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pde:Pden_4868 transcriptional regulator, GntR family.
  
    0.546
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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