STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0367PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mlr2632 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Oant_0368
PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; KEGG: bmb:BruAb1_0310 hypothetical protein.
       0.556
Oant_3313
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: atc:AGR_L_3214 hypothetical protein.
  
    0.478
Oant_0365
TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bmb:BruAb1_0308 dihydropyrimidine dehydrogenase.
  
    0.440
Oant_0366
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bme:BMEI1638 glutamate synthase (NADPH) small chain.
       0.437
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: bms:BR0285 glucose-6-phosphate isomerase; Belongs to the GPI family.
  
   0.432
Oant_4161
PFAM: protein of unknown function DUF930; KEGG: sme:SMb20676 hypothetical protein.
  
     0.428
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.