STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0378PFAM: extracellular solute-binding protein family 3; KEGG: bms:BR0295 amino acid ABC transporter, periplasmic amino acid-binding protein. (282 aa)    
Predicted Functional Partners:
Oant_2763
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMb20976 putative amino acid uptake ABC transporter periplasmic solute-binding protein precursor; Belongs to the bacterial solute-binding protein 3 family.
  
     0.718
Oant_3519
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4082 octopine transport system permease protein.
 
 
 0.714
Oant_2800
PFAM: extracellular solute-binding protein family 3; KEGG: bam:Bamb_3990 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
  
     0.695
Oant_2236
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0953 amino acid ABC transporter, permease protein.
 
 
 0.692
Oant_3265
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc03131 putative amino acid-binding periplasmic ABC transporter protein; Belongs to the bacterial solute-binding protein 3 family.
  
     0.651
Oant_3520
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4083 octopine transport system permease protein.
 
  
 0.651
Oant_3808
PFAM: extracellular solute-binding protein family 3; KEGG: bms:BRA0682 amino acid ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
     0.642
Oant_2237
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0952 amino acid ABC transporter, permease protein.
 
  
 0.632
Oant_3498
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2358 amino acid ABC transporter.
  
   0.607
Oant_2850
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2358 amino acid ABC transporter.
  
   0.591
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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