STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0487KEGG: bmb:BruAb1_0400 hypothetical protein. (227 aa)    
Predicted Functional Partners:
Oant_2521
KEGG: bmb:BruAb1_0790 hypothetical protein.
  
    0.708
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.658
Oant_2523
PFAM: SmpA/OmlA domain protein; KEGG: bms:BR0772 hypothetical protein.
  
     0.652
Oant_0985
PFAM: protein of unknown function DUF214; KEGG: bms:BR1996 membrane protein, putative.
  
     0.641
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
     0.583
Oant_0986
PFAM: protein of unknown function DUF218; KEGG: bme:BMEI0074 hypothetical protein.
  
     0.580
Oant_0486
PFAM: polysaccharide deacetylase; KEGG: bmb:BruAb1_0399 hypothetical protein.
 
     0.571
Oant_1571
KEGG: bms:BR1598 hypothetical protein.
  
     0.566
Oant_0818
TIGRFAM: Double-strand break repair protein AddB; KEGG: bmb:BruAb1_2077 hypothetical protein.
  
     0.558
Oant_1641
PFAM: Protein of unknown function DUF1790; KEGG: bmb:BruAb1_1515 hypothetical protein.
  
     0.536
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.