STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0519PFAM: Polyprenyl synthetase; KEGG: bme:BMEI1532 farnesyl pyrophosphate synthetase / geranyltranstransferase; Belongs to the FPP/GGPP synthase family. (356 aa)    
Predicted Functional Partners:
Oant_2033
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.966
Oant_1126
PFAM: Polyprenyl synthetase; KEGG: bmb:BruAb1_1760 IspA, geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
  
0.923
Oant_2334
KEGG: bms:BR0893 phytoene synthase.
  
 0.913
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
 
 0.896
Oant_2408
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bms:BR0817 metallo-beta-lactamase family protein.
  
    0.723
Oant_2658
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.601
Oant_0517
PFAM: methyltransferase small; KEGG: bme:BMEI1534 methyltransferase; Belongs to the methyltransferase superfamily.
       0.596
Oant_0518
KEGG: bmb:BruAb1_0423 hypothetical protein.
       0.596
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
 
 0.562
Oant_4277
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bms:BRA0054 glutamate synthase, large subunit.
  
  
 0.557
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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