STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0624Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN3285 transcriptional regulator, RipR family. (297 aa)    
Predicted Functional Partners:
Oant_0626
PFAM: extracellular solute-binding protein family 5; KEGG: bbr:BB3712 putative binding-protein-dependent transport periplasmic protein.
 
     0.788
Oant_0625
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bpe:BP2397 putative ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
  
    0.780
Oant_0629
PFAM: peptidase M55 D-aminopeptidase; KEGG: rfr:Rfer_3107 peptidase M55, D-aminopeptidase.
 
     0.775
Oant_3122
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: mlo:mlr7253 hypothetical protein.
  
     0.738
Oant_3836
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bme:BMEII0573 transcriptional regulator, RpiR family.
  
     0.665
Oant_2981
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pna:Pnap_4066 transcriptional regulator, RpiR family.
  
     0.638
Oant_0627
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3104 binding-protein-dependent transport systems inner membrane component.
 
     0.601
Oant_0630
PFAM: peptidase T2 asparaginase 2; KEGG: aav:Aave_1656 peptidase T2, asparaginase 2.
  
    0.597
Oant_0628
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc1382 probable transmembrane ABC transporter protein.
       0.547
Oant_3892
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bms:BRA0744 transcriptional regulator, RpiR family.
  
     0.547
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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