STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0728PFAM: type II secretion system protein; KEGG: mlo:mlr5604 hypothetical protein. (333 aa)    
Predicted Functional Partners:
Oant_0727
PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein.
 
  
 0.998
Oant_0722
PFAM: SAF domain protein; KEGG: mlo:mlr5595 pilus assembly protein cpaB.
 
  
 0.987
Oant_0725
KEGG: mes:Meso_3999 response regulator receiver protein.
 
  
 0.986
Oant_0726
PFAM: type II secretion system protein E; KEGG: mlo:mlr5602 secretory protein kinase, cpaF.
 
  
 0.975
Oant_0723
PFAM: type II and III secretion system protein; transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.967
Oant_0724
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mes:Meso_3998 pilus (Caulobacter type) biogenesis lipoprotein CpaD.
 
     0.911
Oant_0721
PFAM: peptidase A24A prepilin type IV; KEGG: mlo:mlr5594 prepilin peptidase CpaA.
 
   
 0.881
Oant_0719
KEGG: mes:Meso_4096 hypothetical protein.
 
  
 0.869
Oant_0717
KEGG: mlo:mll5590 hypothetical protein.
 
    0.856
Oant_2489
PFAM: Flp/Fap pilin component; KEGG: pilA; pilus subunit protein PilA; K02651 pilus assembly protein PilA.
 
  
 0.842
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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