STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0784PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bms:BR2130 Smp-30/Cgr1 family protein, putative. (302 aa)    
Predicted Functional Partners:
Oant_1422
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bms:BRA0939 2-dehydro-3-deoxygalactonokinase.
 
   
 0.599
gshB
TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; KEGG: bmb:BruAb1_2106 GshB, glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
       0.524
Oant_3341
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bps:BPSS2072 mandelate racemase / muconate lactonizing enzyme.
 
  
 0.462
Oant_3761
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: atc:AGR_C_463 hypothetical protein.
 
  
 0.427
Oant_1423
PFAM: KDPG and KHG aldolase; KEGG: bmb:BruAb2_0295 2-dehydro-3-deoxyphosphogalactonate aldolase, hypothetical.
 
   
 0.421
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.