STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0804KEGG: bms:BR2116 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Oant_0805
TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: bms:BR2115 benzoate transport protein, putative.
       0.760
Oant_2522
PFAM: Ubiquinol-cytochrome C chaperone; KEGG: bmb:BruAb1_0789 hypothetical protein.
  
     0.731
Oant_2086
PFAM: ATP12 ATPase; KEGG: bmb:BruAb1_1008 hypothetical protein.
  
     0.583
Oant_2569
PFAM: ETC complex I subunit conserved region; KEGG: bmb:BruAb1_0738 oxidoreductase, hypothetical.
  
     0.553
Oant_2440
PFAM: Urea transporter; KEGG: noc:Noc_2884 UreA transporter.
  
     0.504
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.475
Oant_0806
KEGG: bms:BR2114 hypothetical protein.
       0.472
Oant_3094
PFAM: MmgE/PrpD family protein; KEGG: rle:pRL110483 putative MmgE/PrpD family protein.
  
     0.411
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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