STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0807PFAM: protein of unknown function DUF45; KEGG: bmb:BruAb1_2088 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Oant_0808
PFAM: protein of unknown function DUF218; KEGG: bme:BMEI2016 hypothetical protein.
  
    0.790
trpF
PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: bme:BMEI2017 N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
       0.682
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
    0.664
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.660
Oant_0811
KEGG: bmb:BruAb1_2084 hypothetical protein.
       0.616
Oant_0806
KEGG: bms:BR2114 hypothetical protein.
       0.571
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
       0.513
Oant_0814
TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: bmb:BruAb1_2081 FolC, FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
       0.458
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.