STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_0979PFAM: protein of unknown function DUF1332; KEGG: bms:BR1882 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Oant_0978
PFAM: HemY domain protein; KEGG: bmb:BruAb1_1861 hypothetical protein.
 
     0.650
Oant_0977
KEGG: bms:BR1885 hypothetical protein.
       0.509
Oant_0806
KEGG: bms:BR2114 hypothetical protein.
  
     0.508
Oant_0580
PFAM: Invasion associated locus B family protein; KEGG: bmb:BruAb1_0488 hypothetical protein.
  
     0.438
Oant_1697
KEGG: sme:SMc03832 conserved hypothetical signal peptide protein.
  
     0.437
Oant_1351
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bms:BRA1029 hypothetical protein.
  
     0.416
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.413
Oant_0976
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.413
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.