STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1111Proline racemase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp), albeit with 170-fold lower efficiency. Displays no proline racemase activity. (337 aa)    
Predicted Functional Partners:
Oant_1110
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: bmb:BruAb1_1774 D-amino acid dehydrogenase small subunit.
 
   
 0.942
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.914
Oant_4436
KEGG: pol:Bpro_3944 hypothetical protein.
    
  0.903
Oant_4074
PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_2554 D-amino-acid dehydrogenase.
 
   
 0.650
Oant_3709
PFAM: FAD dependent oxidoreductase; KEGG: bms:BRA0630 amino acid dehydrogenase, putative.
 
   
 0.500
Oant_2899
PFAM: Malate/L-lactate dehydrogenase; KEGG: atc:AGR_L_410 probable L-malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.420
Oant_1112
PFAM: inner-membrane translocator; KEGG: bms:BR1791 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.413
Oant_1113
PFAM: inner-membrane translocator; KEGG: bmb:BruAb1_1771 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.408
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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