STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1248RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bms:BR1658 RNA polymerase sigma-70 factor, ECF subfamily. (190 aa)    
Predicted Functional Partners:
Oant_1247
KEGG: rle:RL3704 hypothetical protein.
   
   0.891
Oant_1246
PFAM: response regulator receiver; KEGG: bmb:BruAb1_1644 two-component response regulator.
 
  
 0.878
Oant_1694
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: atc:AGR_C_3605 probable sigK protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.727
Oant_1441
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mlo:mll8140 RNA polymerase ECF-type sigma factor.
  
   
 0.724
Oant_1249
Signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: bmb:BruAb1_1646 sensor histidine kinase.
 
  
 0.722
Oant_1244
PFAM: HWE histidine kinase; KEGG: bmb:BruAb1_1642 sensor histidine kinase, hypothetical.
 
   
 0.649
Oant_2774
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_4080 RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.573
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.500
Oant_2130
PFAM: PRC-barrel domain protein; KEGG: mlo:mll3685 hypothetical protein.
  
    0.479
Oant_3398
KEGG: rle:RL3236 putative transmembrane protein.
  
 
 0.474
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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