STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1409PFAM: Asp/Glu racemase; KEGG: sme:SMc04361 putative hydantoin racemase protein. (228 aa)    
Predicted Functional Partners:
Oant_4419
PFAM: Asp/Glu racemase; KEGG: bja:blr5577 hydantoin Racemase.
  
  
  0.970
Oant_1408
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sme:SMc04362 putative transport protein.
 
     0.930
Oant_1407
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rle:pRL120428 putative DNA-binding protein.
 
     0.852
Oant_3417
KEGG: sme:SMc02590 hypothetical protein.
  
     0.474
Oant_3707
KEGG: gme:Gmet_2946 HAD-superfamily hydrolase subfamily IA, variant 3.
  
     0.457
Oant_0117
PFAM: protein of unknown function DUF930; KEGG: bmb:BruAb1_0101 hypothetical protein.
  
     0.405
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.