STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1419PFAM: protein of unknown function DUF1238; KEGG: bme:BMEII0354 sugar transporter. (334 aa)    
Predicted Functional Partners:
Oant_1420
Galactose 1-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bmb:BruAb2_0292 D-galactose 1-dehydrogenase, hypothetical.
 
    0.916
Oant_1421
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: bme:BMEII0356 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
     0.735
Oant_1422
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bms:BRA0939 2-dehydro-3-deoxygalactonokinase.
 
     0.729
Oant_3762
KEGG: atc:AGR_C_4970 hypothetical protein.
 
     0.706
Oant_1423
PFAM: KDPG and KHG aldolase; KEGG: bmb:BruAb2_0295 2-dehydro-3-deoxyphosphogalactonate aldolase, hypothetical.
       0.652
Oant_1424
KEGG: bms:BRA0937 sugar ABC transporter, periplasmic sugar-binding protein.
     
 0.453
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.