STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1504PFAM: peptidase U35 phage prohead HK97; KEGG: syf:Synpcc7942_0734 hypothetical protein. (696 aa)    
Predicted Functional Partners:
Oant_1505
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda.
 
     0.946
Oant_1503
KEGG: nha:Nham_3336 hypothetical protein.
 
     0.898
Oant_1506
PFAM: phage terminase GpA; KEGG: mgm:Mmc1_2050 phage terminase GpA.
 
   
 0.869
Oant_1779
Phage terminase GpA; PFAM: zinc finger DHP-type domain protein; phage terminase GpA; KEGG: nha:Nham_2392 phage terminase GpA.
 
   
 0.780
Oant_2309
PFAM: phage terminase GpA; KEGG: nha:Nham_2392 phage terminase GpA.
 
   
 0.779
Oant_1784
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein lambda; KEGG: syf:Synpcc7942_0733 phage portal protein, lambda.
  
     0.774
Oant_1787
KEGG: nwi:Nwi_2831 hypothetical protein.
  
     0.774
Oant_2305
KEGG: nha:Nham_3336 hypothetical protein.
  
     0.774
Oant_2308
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda.
  
     0.774
Oant_0212
Hypothetical protein.
   
    0.773
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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