STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1548TRAP-type uncharacterized transport system periplasmic component-like protein; KEGG: sma:SAV2481 secreted protein. (296 aa)    
Predicted Functional Partners:
Oant_0888
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: rpb:RPB_3315 phage tail tape measure protein.
  
     0.582
Oant_2292
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: dvu:DVU1107 tail tape measure protein.
  
     0.457
Oant_1677
PFAM: NUDIX hydrolase; KEGG: bmb:BruAb1_1485 MutT/nudix family protein.
  
     0.450
Oant_1506
PFAM: phage terminase GpA; KEGG: mgm:Mmc1_2050 phage terminase GpA.
  
     0.435
Oant_1547
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dra:DR0583 cell division protein FtsH; Belongs to the AAA ATPase family.
       0.434
Oant_2313
KEGG: mlo:mlr8518 hypothetical protein.
  
     0.403
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.