STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1608PFAM: protein of unknown function DUF58; KEGG: bmb:BruAb1_1546 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Oant_1609
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bmf:BAB1_1573 chaperonin ClpA/B:AAA ATPase.
  
 0.980
Oant_1607
TIGRFAM: conserved hypothetical membrane protein; KEGG: bms:BR1558 hypothetical protein.
 
    0.953
Oant_1606
KEGG: bms:BR1559 hypothetical protein.
 
     0.904
Oant_0996
KEGG: bmb:BruAb1_1960 hypothetical protein.
  
   
 0.773
Oant_1610
PFAM: protein of unknown function DUF1285; KEGG: bmb:BruAb1_1544 hypothetical protein.
 
     0.669
Oant_2028
PFAM: Domain of unknown function DUF1849; KEGG: bmb:BruAb1_1170 hypothetical protein.
  
     0.654
Oant_1612
PFAM: Polynucleotide adenylyltransferase region; KEGG: bms:BR1553 tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.644
Oant_1166
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bmb:BruAb1_1732 TPR domain protein.
 
  
 0.643
Oant_1611
PFAM: NUDIX hydrolase; KEGG: bmb:BruAb1_1543 MutT/nudix family protein.
       0.586
Oant_0753
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bmb:BruAb1_2132 transcriptional regulator, Cro/CI family.
  
     0.583
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.