STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1656PFAM: Extensin family protein; KEGG: bmb:BruAb1_1501 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Oant_4248
PFAM: protein of unknown function DUF1007; KEGG: bms:BRA0097 hypothetical protein.
  
     0.592
Oant_1657
PFAM: protein of unknown function DUF486; KEGG: bms:BR1508 hypothetical protein.
       0.513
Oant_0464
PFAM: FixH family protein; KEGG: bms:BR0358 FixH protein, putative.
  
     0.442
Oant_2687
KEGG: bme:BMEI1361 hypothetical cytosolic protein.
  
     0.440
Oant_4196
PFAM: flagellar hook-length control protein; KEGG: bmb:BruAb2_1079 MotD-related protein.
  
     0.428
Oant_1817
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein.
  
     0.421
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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