STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1672PFAM: aminotransferase class I and II; KEGG: bms:BR1495 aspartate aminotransferase. (400 aa)    
Predicted Functional Partners:
Oant_0018
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: bmb:BruAb1_0037 PheA, prephenate dehydratase.
 
 
 0.989
Oant_4277
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bms:BRA0054 glutamate synthase, large subunit.
  
 
 0.952
argG
PFAM: argininosuccinate synthase; KEGG: bmb:BruAb1_0074 ArgG, argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.920
Oant_3562
PFAM: aminotransferase class IV; KEGG: bja:bll7596 D-alanine aminotransferase.
 
 
 0.919
Oant_3846
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.917
Oant_1427
PFAM: aminotransferase class IV; KEGG: bms:BRA0934 D-alanine aminotransferase, putative.
 
 
 0.916
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 0.915
Oant_4025
Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: mbu:Mbur_0428 aminotransferase, class I and II.
  
  
 
0.915
Oant_4428
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PC00215 putative 4-hydroxyphenylpyruvate dioxygenase protein.
   
 
 0.913
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 0.912
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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