STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1680PFAM: acyltransferase 3; KEGG: hne:HNE_1198 acyltransferase family protein. (360 aa)    
Predicted Functional Partners:
Oant_2509
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: bms:BR0781 bacterial sugar transferase.
     
 0.532
Oant_3646
PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: bms:BRA0585 membrane protein, putative.
     
 0.491
Oant_2733
KEGG: cch:Cag_1481 glycosyltransferase-like.
  
  
 0.485
Oant_2505
TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis protein; KEGG: mlo:mlr8439 succinoglycan transport protein ExoP.
     
 0.474
Oant_3369
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bme:BMEII0852 succinoglycan biosynthesis transport protein ExoP.
     
 0.474
Oant_0409
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bms:BR0316 sensor histidine kinase/response regulator.
  
  
 0.446
Oant_1682
PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc01212 putative transport transmembrane protein.
 
    0.420
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: bms:BR1488 carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
       0.411
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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