STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_1836PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: rle:pRL90232 putative sulfatase. (514 aa)    
Predicted Functional Partners:
Oant_1837
PFAM: extracellular solute-binding protein family 5; KEGG: rle:pRL90231 putative substrate-binding component of ABC transporter.
 
     0.867
Oant_4119
PFAM: PTS system Galactitol-specific IIC component; KEGG: vei:Veis_2223 PTS system galactitol-specific IIC component.
   
    0.737
Oant_4380
PFAM: protein of unknown function DUF323; KEGG: bmb:BruAb2_0918 NirV protein, hypothetical.
  
   0.712
Oant_1841
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL90227 putative permease component of ABC transporter.
 
    0.618
Oant_1840
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL90228 putative permease component of ABC transporter.
 
    0.588
Oant_1834
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bms:BR1338 short chain dehydrogenase.
  
 
 0.576
Oant_3357
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bmb:BruAb1_0734 oxidoreductase, short-chain dehydrogenase/reductase family.
  
 
 0.513
Oant_1287
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bme:BMEII0283 3-ketoacyl-(acyl-carrier-protein) reductase.
  
 
 0.511
Oant_1473
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: ret:RHE_CH04047 beta-mannosidase protein.
  
 
 0.510
Oant_1838
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rle:pRL90230 putative component of ABC transporter; Belongs to the ABC transporter superfamily.
       0.509
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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