STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2023PFAM: branched-chain amino acid transport; KEGG: atc:AGR_C_2526 hypothetical protein. (115 aa)    
Predicted Functional Partners:
Oant_2022
PFAM: AzlC family protein; KEGG: sme:SMc02108 hypothetical protein.
 
     0.952
Oant_1020
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: mes:Meso_3018 polysaccharide biosynthesis protein.
  
     0.617
Oant_1226
KEGG: mlo:mll3877 hypothetical protein.
  
     0.615
Oant_0842
PFAM: protein of unknown function DUF1402; KEGG: bms:BR2078 hypothetical protein.
  
     0.587
Oant_0724
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mes:Meso_3998 pilus (Caulobacter type) biogenesis lipoprotein CpaD.
  
     0.559
Oant_1073
KEGG: mlo:mlr4134 hypothetical protein.
  
     0.552
Oant_0409
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bms:BR0316 sensor histidine kinase/response regulator.
  
     0.551
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.547
Oant_2021
TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bmb:BruAb1_1175 ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family.
       0.547
Oant_1225
Porin opacity type; PFAM: surface antigen msp4 family protein; porin opacity type; KEGG: bms:BR1689 outer surface protein.
  
     0.546
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.