STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2167PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: pde:Pden_4346 ABC transporter related. (696 aa)    
Predicted Functional Partners:
Oant_2166
KEGG: pde:Pden_4345 secretion protein HlyD family protein.
 
 
 0.988
Oant_1901
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: mes:Meso_0336 siderophore-interacting protein.
   
   0.902
Oant_3436
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: sme:SMb21315 putative protein secretion protein, HlyD family membrane fusion protein, secretes ExpE1.
 
 
 0.801
Oant_3973
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rle:RL0622 putative HlyD family secretion protein.
 
 
 0.801
Oant_2243
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bmb:BruAb1_0954 outer membrane efflux family protein.
  
  
 0.797
Oant_0881
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:RL2994 putative transmembrane component of ABC transporter.
 
 
 
0.730
Oant_0276
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll0815 ATP-binding protein of ABC transporter.
 
 
 
0.720
Oant_1331
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEII0250 ABC transporter ATP-binding protein.
 
 
 
0.713
Oant_1202
TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEI0323 probable transport ATP-binding protein MsbA.
 
 
 
0.706
Oant_1622
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEI0472 ABC transporter ATP-binding protein.
 
 
 
0.705
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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