STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2169PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bms:BR1084 CaiB/BaiF family protein; Belongs to the CoA-transferase III family. (381 aa)    
Predicted Functional Partners:
Oant_2170
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bms:BR1085 glutaryl-CoA dehydrogenase.
 
 0.798
Oant_0316
PFAM: MaoC domain protein dehydratase; KEGG: sme:SMb21110 putative MaoC-like (monoamine oxidase-like) protein, similar to NodN.
 
 
 0.499
Oant_2001
TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: bms:BR1190 methylmalonyl-CoA mutase.
     
 0.436
Oant_0040
Hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: bmb:BruAb1_0017 3-hydroxy 3-methylglutarate-CoA lyase.
 
  0.423
Oant_2171
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bms:BR1086 transcriptional regulator, LysR family.
       0.402
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.