STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2240PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: bmf:BAB1_0967 membrane protein involved in aromatic hydrocarbon degradation. (408 aa)    
Predicted Functional Partners:
Oant_4238
PFAM: glycosyl transferase family 2; KEGG: bme:BMEII1128 succinoglycan biosynthesis protein ExoM.
  
     0.562
Oant_3931
KEGG: bmb:BruAb1_1602 hypothetical protein.
  
     0.522
Oant_1349
KEGG: bmb:BruAb2_0972 hypothetical membrane protein.
  
     0.507
Oant_2654
KEGG: bmb:BruAb1_0646 hypothetical protein.
 
    0.505
Oant_4031
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bme:BMEII0497 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.488
Oant_0842
PFAM: protein of unknown function DUF1402; KEGG: bms:BR2078 hypothetical protein.
  
    0.476
Oant_1024
PFAM: GCN5-related N-acetyltransferase; KEGG: bms:BR1940 acetyltransferase, GNAT family.
  
     0.452
Oant_0373
PFAM: AMP-dependent synthetase and ligase; KEGG: bme:BMEI1632 acyl-CoA synthase.
 
  
 0.443
Oant_2582
KEGG: bms:BR0704 hypothetical protein.
  
     0.441
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.434
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.